25 skills found
grunwaldlab / MetacoderParsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
tobiasgf / Lulur package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
TillMacher / TaxonTableToolsTaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
DominikBuchner / ApscaleAdvanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
BBaloglu / ASHUREPython-based pipeline for analyzing Nanopore sequencing metabarcoding data
metabaRfactory / MetabaRmetabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
benn888 / PRONAMEPRONAME is an open-source bioinformatics pipeline that allows processing and significantly increasing the accuracy of Nanopore metabarcoding sequencing data.
dbeisser / Natrix2Natrix2 is an open-source bioinformatics pipeline for preprocessing raw amplicon sequencing and metabarcoding data.
jcmcnch / Global RRNA Univeral Metabarcoding Of PlanktonA central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
frederic-mahe / MumuC++ implementation of lulu, a R package for post-clustering curation of metabarcoding data
evaegelyng / MetaBarFlowWorkflow for processing NGS data from metabarcoding experiments
fconstancias / MetabaRpipean R package to process raw metabarcoding data into a phyloseq object using a single command
TillMacher / Apscale GuiAdvanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
HullUni-bioinformatics / Haenfling Et Al 2016Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods
gbif / Metabarcoding Data Toolkit UiFrontend for the eDNA tool
TillMacher / TaxonTableTools2TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data
letizialamperti / DLeDNANew variational autoencoders and deep metric learning based methods improve the dimensionality reduction of environmental DNA metabarcoding data
insect-biome-atlas / HappWorkflow for processing deep metabarcoding data
leholman / MetabarTOADA metabarcoding pipeline for analysing Illumina amplicon data.
sproft / MetBaNAutomated pipeline for metabarcoding data using taxonomical/phylogenetical classification of organisms
