10 skills found
nf-core / ChipseqChIP-seq peak-calling, QC and differential analysis pipeline.
ay-lab / ATACProcATAC-seq processing pipeline
ay-lab / ChIPLineChIP-seq analysis pipeline
mforde84 / ENCODE TF ChIP Pipelineminimal pipeline for SPP and MACS2 peak calling plus secondary IDR analysis
HuntsmanCancerInstitute / MultiRepMacsChIPSeqMultiple-replica multiple-condition ChIPSeq pipeline
crazyhottommy / Genrich Comparesnakemake workflow comparing Genrich and MACS2
skchronicles / PeakCallingBenchmarking ChIP-seq peak callers
CCBR / CARLISLECut And Run anaLysIS pipeLinE calls peaks using MACS2, SEACR and GoPeaks on spike-in normalized input fastqs.
andysaurin / Macs2 IdrCall IDR peaks using MACS2
Gaulton-Lab / Peak Call PipelineScripts and instructions for calling peaks from single nucleus ATAC-seq data using MACS2