44 skills found · Page 1 of 2
GoekeLab / M6anetDetection of m6A from direct RNA-Seq data
novoalab / EpiNanoDetection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
al-mcintyre / Merip Reanalysis ScriptsScripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
al-mcintyre / MCallerA python program to call methylation (m6A in DNA) from nanopore signal data
scottzijiezhang / M6A Seq Analysis WorkflowA pipeline to process m6A-seq data and down stream analysis.
comprna / CHEUIConcurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
weir12 / DENADeep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.
rreybeyb / DeepM6ASeqa deep-learning-based framework for studying m6A
shunliubio / Easym6AProcess m6A/MeRIP-seq data in a single or batch job mode
zhangjun640 / MultiNanoMultiNano is a deep learning framework designed for predicting m6A RNA modifications using raw electrical signals from Oxford Nanopore sequencing. It provides high accuracy across species and conditions, offering a user-friendly pipeline for researchers. MultiNano supports both training from scratch and direct prediction modes.
novoalab / M6ABasecallerAn m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)
al-mcintyre / DEQAn R package to conveniently run DESeq2, edgeR, and QNB for the detection of differential methylation in MeRIP/m6A-seq data.
y9c / M6A SACseq🧪 Optimized protocol for m6A-SAC-seq
zhfanrui / DeepSRAMPdeepSRAMP is a accurate deep learning model for predicting m6A sites by fusing the sequence and genomic position features
ZW-xjtlu / M6ALogisticModelA domain knowledge interface for m6A genomics
XiaLabBioinformatics / M6AMethylationm(6)A methylation analysis
zhongzhd / Ont M6a DetectionNo description available
chuyanwu / M6AMethylation pattern mediated by m6A regulator and tumor microenvironment invasion in lung adenocarcinoma
y9c / M6A CAMseq🧪 m6A-CAM-seq
cma2015 / M6A EvolutionA bioinformatics pipeline for the evolution analysis of m6A in plants
