19 skills found
RUB-Bioinf / VesselExpress🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes
DanuserLab / U Unwrap3DTransform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.
royerlab / DaxiHigh-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
dbsb-juntendo / DescSPIMUser-affordable and versatile light-sheet microscopy system for cleared specimens
JaneliaSciComp / Exllsm Circuit ReconstructionNextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
tlambert03 / Llspy SlmSLM binary mask generator for Lattice Light Sheet microscopy
NiklasRottmayer / General Stripe RemovalThis repository contains Matlab code for removing stripe artifacts from 2D or 3D images. Python code for generating synthetic light-sheet microscopy images is provided, too..
nvladimus / DaoSPIMdaoSPIM microscope project: software and hardware
DeNardoLab / DeepTraCEDeep-learning based pipeline for analysis of whole-brain light sheet microscopy images
francois-a / LlsmtoolsSoftware for processing and analyzing lattice light sheet microscopy data.
Intelligent-SR-Imaging / Meta RLLS VSIMHere we present the meta learning-empowered reflective lattice light-sheet virtual structured illumination microscopy (Meta-rLLS-VSIM), which instantly upgrades LLSM to a near-isotropic super resolution of ∼120-nm laterally and ~160-nm axially.
computational-cell-analytics / Cochlea NetDeep learning-based image analysis for cochleae imaged in light-sheet microscopy
nf-core / LsmquantA pipeline for processing and analysis of light-sheet microscopy images.
tomerlab / PLSM ControlSoftware control for projected light sheet microscopy
artgolden / Tribolium ProcessingFiji scripts for bioimage analysis of light-sheet microscopy data.
roschkoenig / Zebrafish SeizuresA network analysis of acutely induced seizures in zebrafish. Bringing together dynamic causal modelling and light-sheet microscopy
Glasgow-ICG / 3d Printed Modular MicroscopeA 3D-printed, modular microscope for demonstrating light-sheet microscopy (and more) to public audiences
JaneliaSciComp / Lightsheet Processing PipelinePipeline from Philipp Keller (kellerp@janelia.hhmi.org) and group to process light-sheet microscopy data. Originated here: https://www.janelia.org/lab/keller-lab/software/efficient-processing-and-analysis-large-scale-light-sheet-microscopy-data
XiaonaW / LSMLight sheet microscopy with high spatial resolution based on polarized structured illumination beam modulated by the phase mask
