109 skills found · Page 1 of 4
voichek / KmersGWASA library for running k-mers based GWAS
bacpop / PopPUNKPopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
refresh-bio / Kmer DbKmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etc.).
zhangrengang / SubPhaserTo phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.
simonrharris / SKASplit Kmer Analysis
nanoporetech / Kmer ModelsPredictive kmer models for development use
jermp / Fulgor⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
will-rowe / HulkHistosketching Using Little Kmers
josephryan / Estimate Genome Size.plScripts to estimate genome size and coverage from kmer distribution generated by jellyfish
pmelsted / KmerStreamStreaming algorithm for computing kmer statistics for massive genomics datasets
aldertzomer / RFPlasmidPredicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf
OpenGene / UniqueKMERGenerate unique KMERs for every contig in a FASTA file
COMBINE-lab / KmersA bit-packed k-mer representation (and relevant utilities) for rust
johnlees / Seersequence element (kmer) enrichment analysis
anuradhawick / Kmertoolskmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
akcorut / KGWASflowkGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Sh1ne111 / KMERIAA KMER-based genome-wIde Assocation testing approach on polyploids
dkoslicki / MetaPaletteMetagenomic profiling and phylogenetic distances via common kmers
ACEnglish / KanpigKmer Analysis of Pileups for Genotyping
richarddurbin / Modimizera toolset for fast DNA read set matching and assembly using a new type of reduced kmer
