345 skills found · Page 1 of 12
dib-lab / KhmerIn-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
gmarcais / JellyfishA fast multi-threaded k-mer counter
marbl / Merquryk-mer based assembly evaluation
refresh-bio / KMCFast and frugal disk based k-mer counter
bluenote-1577 / Sylphultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
koolproxy / Merlin Koolproxya powerfull ad remove software for merlin xiaobao firmware
fbreitwieser / Krakenuniq🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
EarlhamInst / KATThe K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
onecodex / NeedletailFast FASTX parsing and k-mer methods in Rust
pnpnpn / Dna2vecdna2vec: Consistent vector representations of variable-length k-mers
lh3 / Kmer CntCode examples of fast and simple k-mer counters for tutorial purposes
steineggerlab / MetabuliMetabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.
lh3 / YakYet another k-mer analyzer
marbl / MerylA genomic k-mer counter (and sequence utility) with nice features.
thegenemyers / FASTKA fast K-mer counter for high-fidelity shotgun datasets
jessieren / VirFinderVirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
mgalardini / PyseerSEER, reimplemented in python 🐍🔮
voichek / KmersGWASA library for running k-mers based GWAS
bacpop / PopPUNKPopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
bacpop / Ska.rustSplit k-mer analysis – version 2
