39 skills found · Page 1 of 2
VivekPa / IntroNeuralNetworksIntroducing neural networks to predict stock prices
saketkc / Gencode RegionsExtract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
williamritchie / IRFinderDetecting intron retention from RNA-Seq experiments
dputhier / PygtftkA python package and a set of shell commands to handle GTF files
stephenfloor / Extract Transcript RegionsFor biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
irusri / Extract Intron From Gff3This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
pachterlab / KmaKeep Me Around: Intron Retention Detection
vanallenlab / Retained Intron Neoantigen PipelinePipeline to call neoantigens from intron retention events derived from RNA-Seq data.
fmicompbio / EisaRExon-Intron Split Analysis (EISA) in R
getzlab / ScrinvexSingle Cell RNA Intron-Exon counting
BatoolMM / ExonRR package for generating beautiful and customizable plots for the exons and introns of any gene
RJWANGbioinfo / APAlyzerAPAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach is the comparison of sequencing reads in regions demarcated by high-quality polyadenylation sites (PASs) annotated in the PolyA_DB database (https://exon.apps.wistar.org/PolyA_DB/v3/). The current version (v3.0) uses RNA-seq data to examine APA events in 3’ untranslated regions (3’UTRs) and in introns. The coding regions are used for gene expression calculation.
glarue / IntronICRetrieve annotated intron sequences from an annotated genome and classify them as minor (U12-type) or major (U2-type) using a support vector machine model.
friend1ws / Iravnetintron retention associated variant detection project
Xu-Dong / Exon Intron ExtractorNo description available
friend1ws / Intron Retention Utilsscript for extracting intron retention events
Eldergenix / GenomeMCPAn AI-driven genomic intelligence system delivering structured ClinVar interpretation and high-precision exon, intron, and gene queries using the Model Context Protocol (MCP).
entelecheia / Intronlp 2024Introduction to NLP and LLMs | Fall 2024 | Wed 9-12
riverlee / IntronGTFMake a Intron GTF file from a bed
CaiGroup / Intron SeqFISHused for intron seqFISH
