17 skills found
LauritsSkov / Introgression DetectionNo description available
browning-lab / SprimeThe SPrime program identifies variants that are introgressed from archaic populations.
Shuhua-Group / ArchaicSeeker2.0ArchaicSeeker is a series of software for detecting archaic introgression sequences and reconstructing introgression history. The latest version of this series, ArchaicSeeker 2.0, has the following three notable improvements compared with the original version of this software. First, it can automatically determine the boundary of each introgressed sequence. Next, it is capable of tracing both known and unknown ancestral sources of a given introgressed sequence. Finally, it has the ability to reconstruct the introgression history with more sophisticated introgression models.
btmartin721 / ClineHelpRDetects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
bvernot / Freezing ArcherTools for identifying introgressed archaic sequence.
YingDings / Introgression Detection MethodsNo description available
Chenghong412 / Sheep IntrogressionNo description available
johnomics / Martin Davey Jiggins Evaluating Introgression StatisticsCode and data for "Evaluating statistics for the identification of introgressed loci" by Simon H. Martin, John W. Davey and Chris D. Jiggins.
IsmailM / Introgression TutorialA tutorial on genomic tests for introgression
mhibbins / D3 IntrogressionScripts relevant to Hahn & Hibbins D3 introgression statistic
eoziolor / Grandis IntrogressionThis is the post-analysis of fg data mapped to fh chromosome mapped genome. (pop gen parameters)
slbai01 / Introgression Region DetectDetection and tracking of introgression fragments in the introgression population
antonysuv / Odo IntrogressionPipeline code for Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies
mhibbins / Introgression ReviewScripts and processed data for Hibbins & Hahn 2021
Asian-Pan-Genome / ArchaicIntrogressionScripts and datasets in the study of archaic introgression in modern human genomes
dvespasiani / Archaic Introgression In PNGNo description available
rancilhac / Introgression Tests From Gene TreesScript for detecting signals of introgression in large set of gene trees from unlinked markers
