4,129 skills found · Page 1 of 138
cloudnative-pg / Cloudnative PgCloudNativePG is a comprehensive platform designed to seamlessly manage PostgreSQL databases within Kubernetes environments, covering the entire operational lifecycle from initial deployment to ongoing maintenance
secfigo / Awesome FuzzingA curated list of fuzzing resources ( Books, courses - free and paid, videos, tools, tutorials and vulnerable applications to practice on ) for learning Fuzzing and initial phases of Exploit Development like root cause analysis.
Disassembler0 / Win10 Initial Setup ScriptPowerShell script for automation of routine tasks done after fresh installations of Windows 10 / Server 2016 / Server 2019
devxoul / Then✨ Super sweet syntactic sugar for Swift initializers
neutrinojs / NeutrinoCreate and build modern JavaScript projects with zero initial configuration.
spring-io / InitializrA quickstart generator for Spring projects
canonical / Cloud InitOfficial upstream for the cloud-init: cloud instance initialization
NAalytics / Assemblies Of Putative SARS CoV2 Spike Encoding MRNA Sequences For Vaccines BNT 162b2 And MRNA 1273RNA vaccines have become a key tool in moving forward through the challenges raised both in the current pandemic and in numerous other public health and medical challenges. With the rollout of vaccines for COVID-19, these synthetic mRNAs have become broadly distributed RNA species in numerous human populations. Despite their ubiquity, sequences are not always available for such RNAs. Standard methods facilitate such sequencing. In this note, we provide experimental sequence information for the RNA components of the initial Moderna (https://pubmed.ncbi.nlm.nih.gov/32756549/) and Pfizer/BioNTech (https://pubmed.ncbi.nlm.nih.gov/33301246/) COVID-19 vaccines, allowing a working assembly of the former and a confirmation of previously reported sequence information for the latter RNA. Sharing of sequence information for broadly used therapeutics has the benefit of allowing any researchers or clinicians using sequencing approaches to rapidly identify such sequences as therapeutic-derived rather than host or infectious in origin. For this work, RNAs were obtained as discards from the small portions of vaccine doses that remained in vials after immunization; such portions would have been required to be otherwise discarded and were analyzed under FDA authorization for research use. To obtain the small amounts of RNA needed for characterization, vaccine remnants were phenol-chloroform extracted using TRIzol Reagent (Invitrogen), with intactness assessed by Agilent 2100 Bioanalyzer before and after extraction. Although our analysis mainly focused on RNAs obtained as soon as possible following discard, we also analyzed samples which had been refrigerated (~4 ℃) for up to 42 days with and without the addition of EDTA. Interestingly a substantial fraction of the RNA remained intact in these preparations. We note that the formulation of the vaccines includes numerous key chemical components which are quite possibly unstable under these conditions-- so these data certainly do not suggest that the vaccine as a biological agent is stable. But it is of interest that chemical stability of RNA itself is not sufficient to preclude eventual development of vaccines with a much less involved cold-chain storage and transportation. For further analysis, the initial RNAs were fragmented by heating to 94℃, primed with a random hexamer-tailed adaptor, amplified through a template-switch protocol (Takara SMARTerer Stranded RNA-seq kit), and sequenced using a MiSeq instrument (Illumina) with paired end 78-per end sequencing. As a reference material in specific assays, we included RNA of known concentration and sequence (from bacteriophage MS2). From these data, we obtained partial information on strandedness and a set of segments that could be used for assembly. This was particularly useful for the Moderna vaccine, for which the original vaccine RNA sequence was not available at the time our study was carried out. Contigs encoding full-length spikes were assembled from the Moderna and Pfizer datasets. The Pfizer/BioNTech data [Figure 1] verified the reported sequence for that vaccine (https://berthub.eu/articles/posts/reverse-engineering-source-code-of-the-biontech-pfizer-vaccine/), while the Moderna sequence [Figure 2] could not be checked against a published reference. RNA preparations lacking dsRNA are desirable in generating vaccine formulations as these will minimize an otherwise dramatic biological (and nonspecific) response that vertebrates have to double stranded character in RNA (https://www.nature.com/articles/nrd.2017.243). In the sequence data that we analyzed, we found that the vast majority of reads were from the expected sense strand. In addition, the minority of antisense reads appeared different from sense reads in lacking the characteristic extensions expected from the template switching protocol. Examining only the reads with an evident template switch (as an indicator for strand-of-origin), we observed that both vaccines overwhelmingly yielded sense reads (>99.99%). Independent sequencing assays and other experimental measurements are ongoing and will be needed to determine whether this template-switched sense read fraction in the SmarterSeq protocol indeed represents the actual dsRNA content in the original material. This work provides an initial assessment of two RNAs that are now a part of the human ecosystem and that are likely to appear in numerous other high throughput RNA-seq studies in which a fraction of the individuals may have previously been vaccinated. ProtoAcknowledgements: Thanks to our colleagues for help and suggestions (Nimit Jain, Emily Greenwald, Lamia Wahba, William Wang, Amisha Kumar, Sameer Sundrani, David Lipman, Bijoyita Roy). Figure 1: Spike-encoding contig assembled from BioNTech/Pfizer BNT-162b2 vaccine. Although the full coding region is included, the nature of the methodology used for sequencing and assembly is such that the assembled contig could lack some sequence from the ends of the RNA. Within the assembled sequence, this hypothetical sequence shows a perfect match to the corresponding sequence from documents available online derived from manufacturer communications with the World Health Organization [as reported by https://berthub.eu/articles/posts/reverse-engineering-source-code-of-the-biontech-pfizer-vaccine/]. The 5’ end for the assembly matches the start site noted in these documents, while the read-based assembly lacks an interrupted polyA tail (A30(GCATATGACT)A70) that is expected to be present in the mRNA.
dlundquist / SniproxyProxies incoming HTTP and TLS connections based on the hostname contained in the initial request of the TCP session.
roninoss / Create Expo StackCLI tool to initialize a React Native application with Expo. Provides options to include Typescript, file-based routing via Expo Router, configuration based routing via pure React Navigation, styling via Nativewind, Restyle, Unistyles, StyleSheets, or Tamagui, and/or backend as a service such as Firebase and Supabase.
friendlyanon / Cmake InitThe missing CMake project initializer
fudan-zvg / Semantic Segment AnythingAutomated dense category annotation engine that serves as the initial semantic labeling for the Segment Anything dataset (SA-1B).
hysnsec / Awesome Threat ModellingA curated list of threat modeling resources (Books, courses - free and paid, videos, tools, tutorials and workshops to practice on ) for learning Threat modeling and initial phases of security review.
idisfkj / Android Startup🔥The Android Startup library provides a straightforward, performant way to initialize components at the application startup. Both library developers and app developers can use Android Startup to streamline startup sequences and explicitly set the order of initialization.
Viralmaniar / BigBountyReconBigBountyRecon tool utilises 58 different techniques using various Google dorks and open source tools to expedite the process of initial reconnaissance on the target organisation.
callumboddy / CBZSplashViewTwitter style Splash Screen View. Grows to reveal the Initial view behind
verekia / InitializrHTML5 Boilerplate Build Tool
pry / Pry RailsRails >= 3 pry initializer
hku-mars / LiDAR IMU Init[IROS2022] Robust Real-time LiDAR-inertial Initialization Method.
RedByte1337 / GraphSpyInitial Access and Post-Exploitation Tool for AAD and O365 with a browser-based GUI
