49 skills found · Page 1 of 2
flatironinstitute / CaImAnComputational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
adalca / NeuriteNeural networks toolbox focused on medical image analysis
BIMSBbioinfo / VoltRonSpatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
Chaogan-Yan / DPABIDPABI: a toolbox for Data Processing & Analysis of Brain Imaging
MuscleMap / MuscleMapMuscleMap: An Open-Source, Community-Supported Consortium for Whole-Body Quantitative MRI of Muscle
natverse / NatNeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
fish-quant / Big FishToolbox for the analysis of smFISH images.
ad12 / DOSMAAn AI-powered open-source medical image analysis toolbox
Kitware / SlicerSALTAn open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging studies. This software called Slicer Shape AnaLysis Toolbox (SlicerSALT), will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical power. Altogether this constitutes a crucial resource for the imaging field that will enable many and important new findings in biomedical imaging studies.
BeMoBIL / Bemobil PipelineThe BeMoBIL Pipeline is a MATLAB toolbox for analysis and visualization of mobile brain/body imaging data. It includes both wrappers of EEGLAB and MOBILAB and additional functionalities.
PingjunChen / PyslideDigital Pathology Whole Slide Image Analysis Toolbox
johncolby / Along Tract StatsA MATLAB toolbox for performing along-tract analysis of diffusion tensor imaging (DTI) MRI tractography data.
LarsonLab / Hyperpolarized Mri ToolboxThe goal of this toolbox is to provide open-source research-level and prototyping software tools for hyperpolarized MRI experiments. It is currently based on MATLAB/Octave code, and includes code for designing radiofrequency (RF) pulses, imaging gradients, data reconstruction, and data analysis. doi: 10.5281/zenodo.1198915
jondeuce / DECAES.jlDEcomposition and Component Analysis of Exponential Signals (DECAES) - a Julia implementation of the UBC Myelin Water Imaging (MWI) toolbox for computing voxelwise T2-distributions of multi spin-echo MRI images.
rochefort-lab / FissaA Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
zebrain-lab / Toolbox Romano Et AlComputational toolbox for analysis of calcium imaging data of neuronal populations
Coastal-Imaging-Research-Network / CIRN Quantitative Coastal Imaging ToolboxThe CIRN Introduction to Quantitative Coastal Imaging Toolbox is a collection of MATLAB scripts to produce geo-rectified images specifically tailored for quantitative analysis of coastal environments.
mukamel-lab / CellSortThis toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular signals from imaging data sets. A full description and validation of the method is provided in the paper, "Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data," Neuron, 63:747 (2009): http://tinyurl.com/cellsort
jdiedrichsen / SuitToolbox for the analysis of cerebellar imaging data
agiovann / CalBlitzBlazing fast calcium imaging analysis toolbox
