5 skills found
hanielcedraz / BAQCOMQuality Control, Mapping and Reads Count for RNA-Seq Analysis
AAlhendi1707 / Htseq MergeR script for combine HTSeq outputs into one read count matrix in R
genepattern / MergeHTSeqCountsMerges individial files containing HTSeq read counts into one file
datasnakes / Htseq Count ClusterA cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
kiteomoru / Deconvolution Analysis Of Mouse Liver Cell TypesThis project involves the Deconvolution (Digital flow-cytometry) of mice whole liver. ScRNA-Seq analysis was performed using Seurat R package, RNA-Seq pipeline was performed with HISAT2 (Alignment), HTSEQ (read count). Data normalization was performed, and the data was uploaded to CIBERSORTx to perform deconvolution analysis to identify the differences in cell type fractions between healthy samples and samples with Non-alcoholic Steatohepatitis (NASH).
