9 skills found
humanlongevity / HLAxHLA: Fast and accurate HLA typing from short read sequence data
deepomicslab / SpecHLASpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
BirolLab / HLAminer⛏ HLA predictions from NGS shotgun data
TRON-Bioinformatics / Seq2HLAIn-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq format as input, uses a bowtie index comprising all HLA alleles and outputs the most likely HLA class I and class II genotypes (in 4 digit resolution), a p-value for each call, and the expression of each class.
WansonChoi / HATKA collection of modules to process and analyze IMGT-HLA sequences.
nmdp-bioinformatics / Gfe DbGraph database representing IPD-IMGT/HLA sequence data as GFE
adefelicibus / Soap HlaSOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or WGS data with high accuracy.
gbiagini / HlageniePython package for dealing with HLA sequence data
nmdp-bioinformatics / Imgt2aaextract aligned amino acid sequences from IMGT/HLA
