42 skills found · Page 1 of 2
JonJala / MtagPython command line tool for Multi-Trait Analysis of GWAS (MTAG)
statgen / PhewebA tool to build a website to browse hundreds or thousands of GWAS.
MRCIEU / GwasglueLinking GWAS data to analytical tools in R
freeseek / ScoreTools to work with GWAS-VCF summary statistics files
sankaranlab / SCAVENGESCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.
Kukuster / SumStatsRehabGWAS summary statistics files QC tool
wuyangf7 / OPERAThis software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of molecular phenotypes (e.g., expression level of a gene and DNA methylation level at CpG sites) with a complex trait of interest using summary-level data from GWAS and molecular QTL studies. OPERA is a Bayesian generalization of the SMR & HEIDI approach8 to a multi-omics model, where the molecular phenotypes are considered as exposures and only the complex trait is considered as the outcome. This tool can therefore be used to prioritize molecular phenotypes that mediate the genetic effects for complex trait and provide mechanistic interpretation of the GWAS signal.
YuanmingZhang65 / IIIVmrMLMThe R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN interactions for quantitative traits.
ilarsf / GwasToolsBasic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
kauwelab / PolyRiskScorePRSKB is a website and command-line interface tool for calculating polygenic risk scores using GWA studies from the NHGRI-EBI Catalog.
pgxcentre / Region PlotA tool to plot significant regions of GWAS
xuwei1997 / MRAgentMRAgent is an LLM-based tool that automates Mendelian randomization analysis, reducing manual effort by autonomously scanning literature, selecting GWAS data, and generating comprehensive reports, aiding researchers in exploring disease causality efficiently.
MRCIEU / Gwasglue2Connecting GWAS summary data to analytical tools
WGLab / GenGenA set of software tools to facilitate GWAS analysis
iandunham / ForgeGWAS SNP Regulatory Analysis Tool
corbinq / GAMBITTool for integrative gene-based association analysis using GWAS summary stats
theislab / GWAS ScRNAseq IntegrationA Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS
EBISPOT / Gwas Sumstats Toolsgwas-sumstats-tools
kisudsoe / PostGWAS ToolsThese are tools for post GWAS analysis. Please see below link as a document for install and use.
hclimente / Gwas Tools🧬 Containerized pipelines for GWAS
