13 skills found
MIV-XJTU / SeqGrowGraph[ICCV 2025] Official implementation for "SeqGrowGraph: Learning Lane Topology as a Chain of Graph Expansions"
loukesio / Ggvolc𝐠𝐠𝐯𝐨𝐥𝐜 effortlessly translates differential expression datasets and RNAseq data into informative volcano plots. Highlight genes of interest with unprecedented ease. With just a single line of code, visualize complex datasets, gaining deeper insights and simplifying data representation
Danko-Lab / DREGDetecting Regulatory Elements using GRO-seq and PRO-seq
Danko-Lab / Proseq2.0Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
nf-core / NascentNascent Transcription Processing Pipeline
c-guzman / Cipher Workflow PlatformA data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on cipher.readthedocs.io, it is currently out of date. Follow information in README.
wilig / Net.groppe.sequelA tiny SQL DSL built on clojure.contrib.sql
azofeifa / FStitchAn algorithm to detect nascent RNA transcription in GRO-seq and ChIP-seq
azofeifa / TfitTranscription fit (Tfit) utilizes a generative model of RNA Polymerase to identify sites of divergent transcription in assays like GRO-seq, PRO-seq and GRO-cap
dankoc / GroHMMGeneral analysis package for short read data. Provides a specific emphasis on GRO-seq analysis.
chc-code / ENRSAeNRSA is an enhanced version of NRSA for analyzing nascent transcription profiles generated by PRO-seq, GRO-seq, (m)NET-seq, and Butt-seq data.
Kraus-Lab / Active EnhancersIdentifying active enhancers and well known transcritption factor binding sites from GRO-seq data.
bethgrace5 / Sequoia GroveAngular JS / Java Spring Web Application to Assist Employee Scheduling
