15 skills found
Wytamma / GISAIDRProgrammatically interact with the GISAID database.
HDRUK / Covid 19HDR UK - Resources for 🦠COVID-19 Research
bioinf-mcb / Gisaid ScrapperScrapping tool for GISAID data regarding SARS-CoV-2
CDCgov / SeqsenderAutomated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
nextstrain / Ncov IngestA pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
maximilianh / MultiSubPrepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
poeli / EpiCoV DownloaderDownload all EpiCoV sequcnes from GISAID
niemasd / ViReport COVID 19ViReport analysis of COVID-19 using GISAID data
andersen-lab / 2026 Gisaid ResponseNo description available
c4-driod / GISAID SpidersA selenium spider for GISAID
3dgiordano / SARS CoV 2 VariantsThis project tries to give a glimpse of the different variants of SAR-CoV-2 in the world.
ciarajudge / EvoCovThis is EvoCov, a pipeline designed for analysis of SARS-CoV-2 sequences from GISAID.
happykhan / Subhelperhelper scripts for submission to ena (microbial + sarscov2) and gisaid (sarscov2 only)
saketkc / CovmullerCovmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID
zelenkastiot / S Gene Mutations SARS CoV 2Processing GISAID SARS-CoV-2 emerging variants data and generating a language model using Transformers. The model semantically captures masked glycoprotein amino acid mutations in emerging variants of the SARS-CoV2-virus and gives appropriate scores for each potential aa change.
