422 skills found · Page 1 of 15
freebayes / FreebayesBayesian haplotype-based genetic polymorphism discovery and genotyping.
brentp / Smoovestructural variant calling and genotyping with existing tools, but, smoothly.
cgroza / GraffiTEGraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
abyzovlab / CNVnatora tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
10XGenomics / VartrixSingle-Cell Genotyping Tool
wheaton5 / SouporcellClustering scRNAseq by genotypes
DecodeGenetics / GraphtyperPopulation-scale genotyping using pangenome graphs
molgenis / SystemsgeneticsGeneric Java genotype reader / writer, QTL mapping software, Strand alignment tool
BoevaLab / FREECControl-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
odelaneau / GLIMPSELow Coverage Calling of Genotypes
RabadanLab / ArcasHLAFast and accurate in silico inference of HLA genotypes from RNA-seq
single-cell-genetics / Cellsnp LiteEfficient genotyping bi-allelic SNPs on single cells
BirolLab / StraglrTandem repeat expansion detection or genotyping from long-read alignments
brentp / Peddygenotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
rajanil / FastStructureA variational framework for inferring population structure from SNP genotype data.
ryanlayer / GqtA genotype query interface.
PacificBiosciences / TrgtTandem repeat genotyping and visualization from PacBio HiFi data
23andMe / YhaploIdentifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
iqbal-lab-org / PandoraPan-genome inference and genotyping with long noisy or short accurate reads
XiaoleiLiuBio / G2PG2P: A Genome-Wide-Association-Study Simulation Tool for Genotype Simulation, Phenotype Simulation, and Power Evaluation
