126 skills found · Page 1 of 5
griffithlab / Rnaseq TutorialInformatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
usadellab / HelixerUsing Deep Learning to predict gene annotations
cmdcolin / OddgenesA small database of weird gene annotations
hillerlab / TOGATOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
soedinglab / MetaeukMetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
biothings / Mygene.infoMyGene.info: A BioThings API for gene annotations
MikeAxtell / ShortStackShortStack: Comprehensive annotation and quantification of small RNA genes
krassowski / Easy EntrezRetrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
kjolley / BIGSdbBacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
groupschoof / AHRDHigh throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
sagnikbanerjee15 / FinderA fully automated gene annotator from RNA-Seq expression data
salzberg-lab / BalrogBacterial Annotation by Learned Representation of Genes
kkdey / GSSGGene Set + S2G strategy annotations analyzed for disease architecture
j-andrews7 / GenotifyA minimal desktop app for easy and convenient gene annotation and lookup.
frankMusacchia / AnnocriptAnnocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts. Like our facebook page to be always updated: https://www.facebook.com/annocript
molevol-ub / BitacoraBITACORA: A Bioinformatics tool for gene family annotation
myles-lewis / LocuszoomrA pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
salzberg-lab / PSAURONPSAURON is a machine learning model for rapid assessment of protein coding gene annotation
pianpianyouche / PlascadPlascad is a computationally efficient tool designed for plasmids classification, antibiotic resistance genes (ARGs) annotation and plasmid visualization.
mccoy-lab / MAGEAnalysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.
