86 skills found · Page 1 of 3
trackmate-sc / TrackMateTrackMate is your buddy for your everyday tracking.
fiji / StitchingFiji's Stitching plugins reconstruct big images from tiled input images.
lmb-freiburg / Unet SegmentationThe U-Net Segmentation plugin for Fiji (ImageJ)
segment-anything-models-java / SAMJ IJAn ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.
multi-template-matching / MultiTemplateMatching FijiFiji plugin for object(s) detection using template(s) matching
UU-cellbiology / BigTraceFIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
fiji / Colocalisation AnalysisFiji's plugin for colocalization analysis
fiji / AnalyzeSkeletonImageJ/Fiji plugin to analyze 2D and 3D skeleton images
fiji / CookbookPlugins collated for the Fiji Cookbook
UU-cellbiology / ZstackDepthColorCodeZ-stack Depth Colorcode ImageJ FIJI plugin
fiji / BUnwarpJImageJ/Fiji plugin for consistent elastic registration of 2D images
bonej-org / BoneJ2Plugins for bone image analysis
ariel-waisman / LabelsToROIsA Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
bigdataviewer / Bigdataviewer FijiFiji plugins for starting BigDataViewer and exporting data.
BioImaging-NKI / Cellpose FijiImageJ macros to run Cellpose from Fiji (using the plugin from BIOP-EPFL) and to match nuclei and cell body label maps.
UU-cellbiology / CurveTraceCurve tracing ImageJ plugin
fiji / Skeletonize3DImageJ/Fiji plugin to skeletonize binary images
usnistgov / Lineage MapperLineage Mapper Fiji plugin and MATLAB source code
yu-lab-vt / SynQuantA Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.
saalfeldlab / N5 IjImageJ convenience layer for N5
