101 skills found · Page 1 of 4
lh3 / SeqtkToolkit for processing sequences in FASTA/Q formats
gpertea / GffreadGFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
lmdu / Pyfastxa python package for fast random access to sequences from plain and gzipped FASTA/Q files
tseemann / Snp DistsPairwise SNP distance matrix from a FASTA sequence alignment
tseemann / Any2fastaConvert various sequence formats to FASTA
chasewnelson / SNPGenieProgram for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
sujaikumar / AssemblageTools for working with second gen assemblies, fasta sequences, etc
brentp / Pyfastafast, memory-efficient, pythonic (and command-line) access to fasta sequence files
josiahseaman / FluentDNAFluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
BioJulia / FASTX.jlParse and process FASTA and FASTQ formatted files of biological sequences.
ekg / Fastahackutilities for indexing and sequence extraction from FASTA files
lenaschimmel / Sc2rfSARS-Cov-2 Recombinant Finder for fasta sequences
ranwez-search / SeqTUIA fast terminal-based viewer and command-line toolkit for molecular sequences (DNA, AA). View, translate, convert (to FASTA), and combine sequences aligned or not — all from the terminal.
bcthomas / PullseqUtility program for extracting sequences from a fasta/fastq file
PatrickKueck / FASconCAT GFASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.
imartayan / HelicaseTearing through FASTA/Q sequences
irusri / Extract Intron From Gff3This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.
gencorefacility / ReformModify existing reference fasta and gff3/gtf files to include a new sequence
indraniel / FqgrepAn approximate sequence pattern matcher for FASTQ/FASTA files.
aziele / Pfam ScanA tool for scanning FASTA protein sequences against a library of Pfam HMMs
