54 skills found · Page 1 of 2
lh3 / SeqtkToolkit for processing sequences in FASTA/Q formats
gpertea / GffreadGFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
edgardomortiz / Vcf2phylipConvert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
tseemann / Any2fastaConvert various sequence formats to FASTA
nylander / Catfasta2phymlConcatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
BioJulia / FASTX.jlParse and process FASTA and FASTQ formatted files of biological sequences.
rrwick / Core SNP Filtera tool to filter sites in a FASTA-format whole-genome pseudo-alignment
cobilab / CryfaA secure encryption tool for genomic data
Sunhh / NGS Data ProcessingTool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
KatariinaParnanen / MobileGeneticElementDatabaseContains a fasta format database of a large variety of mobile genetic elements and an annotation file
maximilianh / MultiSubPrepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.
PatrickKueck / FASconCAT GFASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignment files for phylogenetic and population genetic purposes. The main options include sequence renaming, file format conversion, sequence translation, consensus generation of predefined sequence blocks, and RY coding as well as site exclusions in nucleotide sequences. FASconCAT-G implemented process options can be invoked in any combination and performed during a single process run. FASconCAT-G can also read in and handle different file formats (FASTA, CLUSTAL, and PHYLIP) in a single run.
kad-ecoli / Pdb2fastaimplementing PDB to FASTA file format conversion in multiple languages
UberClifford / BepiPred 3.0BepiPred3.0 predicts B-cell epitopes from proteins sequences in fasta format.
pierrepeterlongo / Kmer2sequencesGiven a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
dwpeng / Filterxprocess any file in tabular format. Fasta/fastq/GTF/GFF/VCF/SAM/BED
moold / Kseq RsA FASTA/FASTQ format parser library
tamuri / TreesubA small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated phylogenetic tree showing which substitutions occurred on a given branch. Originally written for colleagues at the MRC NIMR.
Lattice-Automation / SeqparseParse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format
carlobaldassi / FastaIO.jlUtilities to read/write FASTA format files in Julia
