88 skills found · Page 1 of 3
snakemake-workflows / Dna Seq Gatk Variant CallingThis Snakemake pipeline implements the GATK best-practices workflow
crazyhottommy / DNA Seq AnalysisDNA sequencing analysis notes from Ming Tang
griffithlab / RegtoolsIntegrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
ygidtu / Trackplottrackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
snakemake-workflows / Dna Seq VarlociraptorA Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
NLM-DIR / BAMscaleBAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
DanielBiegler / Visualize Dna SequencesVisualizing DNA Sequences via Javascript
krishnaik06 / DNA Sequencing ClassifierNo description available
nageshsinghc4 / DNA Sequence Machine LearningUnderstand DNA structure and how machine learning can be used to work with DNA sequence data.
claytonjwong / Algorithms DNA Sequencing🧬 Algorithms for DNA Sequencing by Johns Hopkins University
kieranrcampbell / ClonealignBayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
seasoncloud / AlleloscopeAlleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
nf-core / CircdnaPipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
dna-seq / Dna SeqDNA-Seq pipeline
pdxgx / Neoepiscopepredicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
Phillip-a-richmond / GenomeAnalysisModuleWelcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
asmitapoddar / Deep Learning DNA SequencesDeep learning for identifying important motifs in DNA sequences. Exploration of the structure of the human genome by training neural network architectures (CNN, LSTM, Attention).
sidsriv / Algorithms For DNA SequencingCodes from Coursera's course Algorithms for DNA sequencing, part of genomic data science specialization offered by Johns Hopkins University
ProSolo / ProsoloProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
arminZolfaghari / DNA Sequence ClassificationAnalysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022
