15 skills found
ginolhac / MapDamagemapDamage: tracking and quantifying damage patterns in ancient DNA sequences
BioImaging-NKI / Foci AnalyzerImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells
maxibor / PydamageDamage parameter estimation for ancient DNA
kkdey / ARchaicExploration, clustering, visualization and classification of DNA damage patterns
Integrative-Transcriptomics / DamageProfilerA Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage
kildealab / Topas Clustered Dna DamageTOPAS application for simulating clustered DNA damage
yuchaojiang / Damage RepairGenome-wide DNA damage and excision repair maps
BoyanZhou / AntCallerSNP calling and genotyping for damaged DNA
KarrLab / BpformsToolkit for concretely describing non-canonical DNA, RNA, and proteins
morrislab / DamutaTandem signatures of DNA damage and misrepair in cancer
genomewalker / AmberAMBER - Ancient Metagenomic BinnER: damage-aware contrastive learning for ancient DNA binning
CpgSthlm / ADNA DamageIt contains scripts to handle ancient DNA damages
Afrodith / IDDRRA ProjectA novel platform, based on Geant4-DNA to quantify DNA Damage by Ionizing Radiation Procedures
dekkerlab / Zagelbaum Etal NSMB 2022Notebooks for Hi-C analyses related to "Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization".
SPARCED / SPARCEDMechanistic Pan-Cancer Signaling Model
