27 skills found
bebop / PolyA Go package for engineering organisms.
Koeng101 / DnadesignA lua package for designing DNA.
feldman4 / Dna BarcodesGenerate robust DNA barcode sets
bioscan-ml / BIOSCAN 1MA dataset of 1M insect specimens with DNA barcodes, taxonomy, and images.
LaoZZZZZ / Bartender 1.1This bartender version could handle arbitrary length of barcode
hawkjo / FreebarcodesFREE Divergence Error-Correcting DNA Barcodes
umich-brcf-bioinf / ConnorDeduplication based on custom inline DNA barcodes.
xuchang116 / SmCountersmCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller", BMC Genomics, 2017 18:5. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3425-4
bioscan-ml / BarcodeBERTA transformer model for DNA barcode representation learning and taxonomic classification.
mdshw5 / HamstringTools for generating and decoding error-correcting DNA barcodes
uoguelph-mlrg / PROTAX GPUGPU-accelerated DNA barcode classification
biocodellc / Biocode LimsThe Biocode LIMS plugin integrates Geneious with your lab workflow, allowing you to track processes through tissue sample, extraction, PCR, sequencing and assembly. It is best suited for large scale DNA barcoding efforts.
Nik-Tavakolian / ShepherdShepherd: accurate clustering for correcting DNA barcode errors: https://doi.org/10.1093/bioinformatics/btac395
Abhivyakti07 / DNA Barcoding For Species ClassificationEncoding DNA Barcode dataset for classifying plant species using various deep learning techniques.
tadeu95 / BAGSBarcode, Audit & Grade System: An R-based web application for data mining, auditing and annotation of DNA barcode libraries.
Roco-scientist / NGS Barcode CountCounts barcodes within next generation sequencing data. DNA encoded libraries (DEL), CRISPR, and barcode-seq
lzamparo / DNAbarcodesSimple generator of DNA barcodes for sequencing experiments
joshuaowalker / SpecimuxHigh-performance dual barcode and primer demultiplexer for MinION sequenced reads, optimized for fungal DNA barcoding.
DNA-BarKeeper / BarkeeperA versatile web framework to assemble, analyze and manage DNA barcode data and metadata
emmawahl / FacepaiScripts for executing a filtering, clustering and identification pipeline for eDNA samples.
