54 skills found · Page 1 of 2
ratschlab / MetagraphScalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
waveygang / Wfmashbase-accurate DNA sequence alignments using WFA and mashmap3
cbcrg / TcoffeeA collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
chrovis / CljamA DNA Sequence Alignment/Map (SAM) library for Clojure
RWilton / AriocArioc: GPU-accelerated DNA short-read alignment
OpenHero / GblastnG-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
ruanjue / BsalignBanded Striped DNA Sequence Alignment
dohlee / Metheor:comet: Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
stuckinaboot / IGenomicsThe first app for Mobile DNA Sequence Alignment and Analysis
opencb / Hpg AlignerHPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
slzhao / QC3QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.
ekg / Edyeetbase-accurate DNA sequence alignments using edlib and mashmap2
swarris / PyPaSWASProgram for DNA/RNA/protein sequence alignment, read mapping and trimming. Extended python version of PaSWAS, supporting OpenCL and CUDA devices.
NuttyLogic / BSBoltBiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
ben-laufer / CpG MeA whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
BilkentCompGen / GateKeeperGateKeeper: Fast Alignment Filter for DNA Short Read Mapping
GregoryFaust / Yahayaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp to 32kb.
brannala / SequedDNA sequence editor and alignment viewer for emacs
molgenis / NGS DNANGS DNA best practice pipeline for Illumina sequencing - alignment, variant calling, annotation and QC
tkchafin / ScriptsRandom scripts, mostly for dealing with RADseq data and DNA sequence alignments
