65 skills found · Page 1 of 3
edgardomortiz / Vcf2phylipConvert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
pjedge / Longshotdiploid SNV caller for error-prone reads
PacificBiosciences / FALCONFALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries
marbl / HG002A complete diploid human genome
lh3 / HickitTAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
KolmogorovLab / HapdupPipeline to convert a haploid assembly into diploid
wangyibin / CPhasingC-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on 3C-based data (Pore-C, CiFi, Hi-C，Omni-C).
phasegenomics / FALCON PhaseFALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
10XGenomics / Supernova10x Genomics Linked-Read Diploid De Novo Assembler
deepomicslab / SpecHLASpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
phasebook / PhasebookHaplotype aware de novo assembly of diploid genome from long reads
JiaoLab2021 / VarigraphAn accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
rlorigro / GFAseTool for globally phasing diploid assembly graphs with orthogonal data
BitsRobocon / Quadruped DIPLOIDDeveloping a four-legged Quadruped robot 'DIPLOID' with stable walking by reinforced learning on bezier gait and terrain awareness using SLAM technique as a part of long-term project undertaken by Team Robocon. (2019-present)
schneebergerlab / FindGSEfindGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a skew normal distribution model.
schatzlab / PseudohaploidCreate a pseudohaploid assembly from a partially resolved diploid assembly
KolmogorovLab / HapdiffSV calling for diploid assemblies
PacificBiosciences / FALCON UnzipMaking diploid assembly becomes common practice for genomic study
churchill-lab / G2gtoolsPersonal diploid genome creation and coordinate conversion
ban-m / JtkJTK -- a regional diploid genome assembler
