22 skills found
hammerlab / FlowdecTensorFlow Deconvolution for Microscopy Data
sakoho81 / MiplibA Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
tlambert03 / PycudadeconPython wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
Biomedical-Imaging-Group / DeconvolutionLab2Java (ImageJ/Fiji) software package for 3D deconvolution microscopy
elgw / DeconwolfDeconvolution of widefield microscopy images and generation of point spread functions
apsk14 / RdmpyOfficial implementation of Ring Deconvolution Microscopy from https://www.nature.com/articles/s41592-025-02684-5
idiap / PsfestimationCode for the PyTorch implementation of "Spatially-Variant CNN-based Point Spread Function Estimation for Blind Deconvolution and Depth Estimation in Optical Microscopy", IEEE Transactions on Image Processing, 2020.
computational-imaging / ThreeDeconv.jlA convex 3D deconvolution algorithm for low photon count fluorescence imaging
idiap / SemiblindpsfdeconvCode for "Semi-Blind Spatially-Variant Deconvolution in Optical Microscopy with Local Point Spread Function Estimation By Use Of Convolutional Neural Networks" ICIP 2018
abhijit-15 / Deconvolution3DCodes for 3D Deconvolution of Microscopy Images
AndrewGYork / Simple Sim Fusion DemoSimple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution
pvjosue / SLNet XLFMNetReal-Time Light Field 3D Microscopy via Sparsity-Driven Learned Deconvolution
landinig / IJ Colour Deconvolution2The Colour Deconvolution 2 ImageJ plugin implements stain unmixing with Ruifrok and Johnston’s method described in [Ruifrok AC, Johnston DA. Quantification of histochemical staining by color deconvolution. Analytical and Quantitative Cytology and Histology 23: 291-299, 2001]. The technique is useful to unmix dyes in images where colours mix subtractively (bright field microscopy using histological stains, watercolours or printed material using transparent inks). It is not suitable for fluorescence microscopy (fluorophores mix additively) or reflectance images. The code is based on a NIH Image macro kindly provided by A. C. Ruifrok with additional modifications. See the source code for the version history and contributors.
wsphillips / LightField.jlPSF simulation and 3D Deconvolution for Light-Field Microscopy in Julia
FerreolS / Tipi4icytipi4icy is a collection of Icy plugins based on TiPi
MrDongZhenyu / Light Field Deconvolution Microscopy LFDMNo description available
leeroyhannover / DeBCRDeBCR for microscopy Denoising/Deblurring/Deconvolution
compgeolab / Micromag Euler DipolePaper: Full vector inversion of magnetic microscopy images using Euler deconvolution as a priori information
qiqi-lu / KldeconvA fluorescence microscopy image deconvolution algorithm based on kernel learned from data
NICALab / 3DMOfficial code for "3DM: Deep decomposition and deconvolution microscopy for rapid neural activity imaging", Optics Express.
