16 skills found
CMUCTAT / CTATCognitive Tutor Authoring Tools
TrinityCTAT / Trinity CTATNo description available
TrinityCTAT / Ctat MutationsMutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19
TrinityCTAT / CTAT LR Fusionfusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector
nf-core / ViralintegrationAnalysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
TrinityCTAT / CTAT VirusIntegrationFinderNo description available
fenglin0 / Benchmarking Variant CallersIn this study, we perform systematic comparative analysis of seven widely-used SNV-calling methods, including SAMtools, the GATK Best Practices pipeline, CTAT, FreeBayes, MuTect2, Strelka2 and VarScan2, on both simulated and real single-cell RNA-seq datasets. We evaluate the performances of these tools in different read depths, genomic contexts, functional regions and variant allele frequencies.
TrinityCTAT / Ctat Genome Lib BuilderSoftware used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components
TrinityCTAT / CTAT SPLICINGdetection of cancer splicing aberrations
FusionAnnotator / CTAT HumanFusionLibdata repo for fusions found in human genomes and transcriptomes
gautamyadavs / AVLTreeIntelligent Tutoring System for AVL Tree using CTAT
davidsanchez / CTAtoolsSet of tools to analyse CTA data
apprenticelearner / AL TrainA repository for the CTAT HTML based training harness for Apprentice Learner agents.
CMUCTAT / XBlockCTATThe CTAT Intelligent Tutor XBlock driver
kurtraschke / Ctatt GtfsrealtimeGTFS-realtime for CTA Train Tracker
CMUCTAT / CTATWebAppWeb App for CTAT
