107 skills found · Page 1 of 4
Adibvafa / CodonTransformerCodonTransformer (1M+ Downloads); The tool for codon optimization, optimizing DNA for protein expression
Lattice-Automation / Icor Codon OptimizationRNN-based Codon Optimization Tool. Publication: https://doi.org/10.1186/s12859-023-05246-8
NVIDIA-Digital-Bio / CodonFMA family of codon-resolution language models trained on 130 million protein-coding sequences from over 20,000 species.
exaloop / SeqCodon's bioinformatics module
oxpig / CaLMProtein language model trained on coding DNA
kfuku52 / CsubstAnalyzing combinations of codon substitution histories
FPPGroup / CodonBERTCodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
Edinburgh-Genome-Foundry / Python Codon Tables:bar_chart: Codon usage tables in code-friendly format + Python bindings
Benjamin-Lee / CodonAdaptationIndexPython Implementation of Codon Adaption Index
rega-cev / VirulignVIRULIGN: fast codon-correct alignment and annotation of viral genomes
nleroy917 / OptipyzerMulti-Species Codon Optimization Engine
ChangLabSNU / VaxPressCodon Optimizer for mRNA Vaccine Design
adelq / DndsCalculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.
SouradiptoC / CodonUA python project for analysis of codon usage for gene or genome analysis
schatzlab / Scikit RiboAccurate estimation and robust modelling of translation dynamics at codon resolution
BioinfoHR / CoRdonCodon Usage Analysis and Prediction of Gene Expressivity
robinvanderlee / Positive SelectionScripts and procedures for detecting positively selected genes and codons in primates
alondmnt / Codon BiasPython package of codon usage bias analysis tools
CartwrightLab / CoatiCodon-Aware Multiple Sequence Alignments
ohlerlab / RiboseQCPipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
