9 skills found
nf-core / CircrnacircRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
PSSUN / CircCodeA Python3-base pipeline for translated circular RNA(circRNA) identification
OncoHarmony-Network / Circrna PipelineCancer circRNA identification pipeline with an ensemble approach
egaffo / CirComPara:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
eandresleon / MiARma SeqmiARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
egaffo / Circompara2Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection methods
annadalmolin / CRAFTCRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.
arthuryxt / AcfsA pipeline for de novo circRNA identification
BarryDigby / Circrna OriginalNextflow pipeline to scan high throughput sequencing data for circRNAs, perform differential expression and generate circRNA-miRNA targets
