65 skills found · Page 1 of 3
YangLab / CIRCexplorer2circular RNA analysis toolset
iprada / Circle MapA method for circular DNA detection based on probabilistic mapping of ultrashort reads
YangLab / CIRCexplorerA combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)
nf-core / CircrnacircRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data
marvin-jens / Find Circtools to find circRNAs in RNA-seq data
dieterich-lab / DCCDCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.
smangul1 / RopThe Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
AugustMe / A B Relationshipbioinformatics，miRNA, circRNA, lncRNA, microbe, protein, drug, disease, virus
dieterich-lab / Circtoolscirctools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.
JesseYule / CircRNA DiseaseAnalysis利用深度学习模型挖掘CircRNA-Disease之间的关联
PSSUN / CircCodeA Python3-base pipeline for translated circular RNA(circRNA) identification
Benjamin-Lee / VdsearchViroid-like circRNA discovery and analysis suite
VCCRI / UlarcircAn R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
OncoHarmony-Network / Circrna PipelineCancer circRNA identification pipeline with an ensemble approach
orzechoj / CircRNA FinderPipeline for finding circular RNAs from RNA-seq data, based on STAR. Used in (Westholm et al, Cell Reports, 2014).
eandresleon / MiARma SeqmiARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
egaffo / CirComPara:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
rajewsky-lab / Find Circ2Find circRNAs in RNA-seq data.
lanbiolab / KGANCDAKGANCDA is effective to predict associations between circRNA and cancer, which is based on knowledge graph attention network. The detail of the paper will be released in this page after the paper accepted.
bioxfu / CircRNAFindera tool for identifying circular RNAs using RNA-Seq data
