7 skills found
haowenz / ChromapFast alignment and preprocessing of chromatin profiles
liulab-dfci / CHIPSA Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
homeveg / Nuctoolssoftware for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
KunFang93 / TumorSpecific3DChromatinDomainCodes for 'Hi-C profiling in tissues reveals tumour-specific three-dimensional chromatin domains and novel looping-mediated biological pathways in breast cancer endocrine resistance'
klduval / CutNRun 2021scripts from "High resolution profiling of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&TAG"
massonix / SLOcatoRSLOcatoR is an R package to annotate single-cell transcriptomes and open chromatin profiles from secondary lymphoid organs using the tonsil atlas as reference
Gitsiba / ATAC SeqModular and reproducible ATAC‑seq analysis pipeline for chromatin accessibility profiling. Includes preprocessing, peak calling, QC, and visualization, with support for hg38 reference genome and publication‑ready outputs
