36 skills found · Page 1 of 2
CellProfiler / CellProfilerAn open-source application for biological image analysis
hallvaaw / Awesome Biological Image AnalysisA curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
CellProfiler / CellProfiler AnalystOpen-source software for exploring and analyzing large, high-dimensional image-derived data.
cytomining / PycytominerPython package for processing image-based profiling data
BodenmillerGroup / ImcSegmentationPipelineA pixel classification based multiplexed image segmentation pipeline
CellProfiler / TutorialsCellProfiler tutorial pipelines and images
cytodata / Awesome CytodataA curated list of awesome cytodata resources
CellProfiler / CellProfiler PluginsCommunity-contributed and experimental CellProfiler modules.
DistributedScience / Distributed CellProfilerRun encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
CellProfiler / ExamplesExample CellProfiler pipelines.
cytomining / CytoTableTransform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
CellProfiler / NotebooksJupyter notebooks for CellProfiler and friends
BodenmillerGroup / ImcPluginsCPCellProfiler plugins for multiplexed image analysis
pharmbio / Cellprofiler DockerDockerfile to build a working CellProfiler (http://cellprofiler.org/) image
broadinstitute / Cellprofiler On TerraRun CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.
cytomining / Profiling HandbookImage-based Profiling Handbook
CellProfiler / CellProfiler 1.0:warning: ARCHIVED :warning: CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler
multiplexIHC / 12plex IHCThis repository provides the FIJI Macro and CellProfiler pipelines utilized in the manuscript, Tsujikawa et al., "Quantitative multiplex IHC reveals myeloid-inflamed tumor-immune complexity associated with poor prognosis".
ahklemm / CellProfiler IntroductionA first introduction into CellProfiler.
CellProfiler / CoreCore classes and components used by CellProfiler
