123 skills found · Page 1 of 5
ArcInstitute / Arc Virtual Cell AtlasArc Virtual Cell Atlas
Swarbricklab-code / BrCa Cell AtlasData processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
immunogenomics / SymphonyEfficient and precise single-cell reference atlas mapping with Symphony
parashardhapola / ScarfToolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas scale datasets with millions of cells on laptop.
hiyin / ScopeplusScope+: An open source generalizable architecture for single-cell atlases at sample and cell levels
AllenInstitute / Abc Atlas AccessDocumentation and examples demonstrating how to access data from the Allen Brain Cell Atlas
stemangiola / CuratedAtlasQueryRTidy R query API for the harmonised and curated CELLxGENE single-cell atlas.
icbi-lab / LucaSingle-cell Lung Cancer Atlas with 1.2M cells
Single-Cell-Genomics-Group-CNAG-CRG / Tumor Immune Cell AtlasCode repository for the Tumor Immune Cell Atlas (TICA) project
ggjlab / ScMCAMouse cell atlas
LungCellAtlas / HLCA ReproducibilityThis repository contains all code used for the Human Lung Cell Atlas project.
HCA-integration / ScAtlasTbPipeline framework for iteratively and reproducibly building and evaluating single cell atlases
ajwilk / 2020 Wilk COVIDReproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"
Zafar-Lab / ScDREAMERscDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier
czbiohub-sf / Tabula SapiensSingle Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
OmicsML / SpatialCTDA large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution
navinlabcode / HumanBreastCellAtlasRepository for codes for the HBCA paper
cboix / Admultiregion AnalysisCode repository for single-cell atlas of Alzheimer's disease progression across brain regions
LungCellAtlas / ScRNAseq PipelinesRepository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
bei-lab / ScRNA AHCASingle-cell transcriptome profiling of an adult human cell atlas of 15 major organs
