868 skills found · Page 1 of 29
scverse / ScanpySingle-cell analysis in Python. Scales to >100M cells.
scverse / Scvi ToolsDeep probabilistic analysis of single-cell and spatial omics data
theislab / Single Cell TutorialSingle cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
qupath / QupathQuPath - Open-source bioimage analysis for research
Starlitnightly / OmicverseA python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
sqjin / CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
zhanghao-njmu / SCPAn end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
jinworks / CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
scverse / SquidpySpatial Single Cell Analysis in Python
vanvalenlab / Deepcell TfDeep Learning Library for Single Cell Analysis
10XGenomics / Cellranger10x Genomics Single Cell Analysis
stuart-lab / SignacR toolkit for the analysis of single-cell chromatin data
OmicsML / DanceDANCE: a deep learning library and benchmark platform for single-cell analysis
NVIDIA-Genomics-Research / Rapids Single Cell ExamplesExamples of single-cell genomic analysis accelerated with RAPIDS
scRNA-tools / ScRNA ToolsTable of software for the analysis of single-cell RNA-seq data.
r3fang / SnapATACAnalysis Pipeline for Single Cell ATAC-seq
scverse / SnapATAC2Single-cell epigenomics analysis tools
liulab-dfci / MAESTROSingle-cell Transcriptome and Regulome Analysis Pipeline
scverse / PertpySingle-cell perturbation analysis
samuel-marsh / ScCustomizeR package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
