26 skills found
WGLab / Phenolyzerphenotype-based prioritization of candidate genes for human diseases
linguoliang / VennPainterA tool for the comparison and identification of candidate genes based on Venn diagrams
xukaili / CandiHapA haplotype analysis toolkit for natural variation study.
Neurotechnology-at-ETH-Zurich / SiRNA DesignCollection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA design tools, identify which candidates are suggested by multiple different software tools, and perform further quality checking and validation on identified candidates.
hanasusak / CDrivercDriver R package for finding candidate driver genes in cancers
kenichi-shimada / Depmap AnalysisThis repostory contains codes for Shimada et al., "A tool for browsing the Cancer Dependency Map reveals functional connections between genes and helps predict the efficacy and selectivity of candidate cancer drugs"
greenelab / Tad Pathways PipelinePipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
zhaouu / POCKETPriOritizing the Candidate genes by incorporating information of Knowledge-based gene sets, Effects of variants, GWAS and TWAS
fulxie / RefFinderRefFinder is a user-friendly web-based comprehensive tool developed for evaluating and screening reference genes from extensive experimental datasets. It integrates the currently available major computational programs (geNorm, Normfinder, BestKeeper, and the comparative ��Ct method) to compare and rank the tested candidate reference genes. Based on the rankings from each program, It assigns an appropriate weight to an individual gene and calculated the geometric mean of their weights for the overall final ranking.
nuno-agostinho / CTRAPIdentification of candidate causal perturbations from differential gene expression data
venice-juanillas / Galaxy For Cropstools for candidate gene analysis, gwas and genomic selection for crops
faramer86 / GPriorGPrior is a Gene Prioritization tool that uses PU learning to prioritize candidate genes based on their similarity with a set of known positive examples. As a result it returns a table with probabilities for each gene.
ds763 / PRoGeMA general analysis framework and tool for the PRioritisation of candidate causal Genes at Molecular QTLs
pwh124 / Sc Da ParkinsonsData and code for "Single-Cell RNA-Seq of Mouse Dopaminergic Neurons Informs Candidate Gene Selection for Sporadic Parkinson Disease" (Hook, 2018)
iric-soft / EpcyEPCY: Evaluation of Predictive CapabilitY for ranking biomarker gene candidates
malemay / Soybean Kmer GwasCode used for "k-mer-based GWAS enhances the discovery of causal variants and candidate genes in soybean"
montilab / IEDGEintegrative analysis of (epi-)DNA and gene expression data for the identification of candidate cancer drivers
Dario-Galanti / Multipheno GWASScripts for running multi-phenotype GWAS using mixed models with the R package "rrBLUP". Additional functionality includes phenotype transformations and enrichment of a-priori candidate genes.
PBR / QTMQTLTableMiner++ tool for mining tables in scientific articles
ArnaudDroitLab / LD AnnotPractical program to annotate candidate polymorphism using annotations for genes in genetic linkage in the specific experiment.
