228 skills found · Page 1 of 8
crazyhottommy / Getting Started With Genomics Tools And ResourcesUnix, R and python tools for genomics and data science
cBioPortal / CbioportalcBioPortal for Cancer Genomics
dellytools / DellyDELLY2: Structural variant discovery by integrated paired-end and split-read analysis
PoisonAlien / MaftoolsSummarize, Analyze and Visualize MAF files from TCGA or in-house studies.
tariqdaouda / PyGenoPersonalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
seandavi / Awesome Cancer Variant ResourcesA community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.
eweitz / IdeogramChromosome visualization for the web
brentp / Somalierfast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
sigven / PcgrPersonal Cancer Genome Reporter (PCGR)
mahmoodlab / PORPOISEPan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
kharchenkolab / NumbatHaplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome
bioinform / SomaticseqAn ensemble approach to accurately detect somatic mutations using SomaticSeq
joiningdata / LollipopsLollipop-style mutation diagrams for annotating genetic variations.
genome-spy / Genome SpyA visualization grammar and GPU-accelerated toolkit for genomic data
SigProfilerSuite / SigProfilerExtractorSigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
greenelab / TybaltTraining and evaluating a variational autoencoder for pan-cancer gene expression data
nygenome / LancetMicroassembly based somatic variant caller for NGS data
cBioPortal / Cbioportal FrontendReact Frontend of cBioPortal :tada:
ding-lab / Msisensormicrosatellite instability detection using tumor only or paired tumor-normal data
prasadseemakurthi / Deep Neural Networks HealthCareTangible and Practical Deep Learning Projects Repository for Healthcare such as Cancer, Drug Discovery, Genomic and More
