74 skills found · Page 1 of 3
tariqdaouda / PyGenoPersonalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
sigven / PcgrPersonal Cancer Genome Reporter (PCGR)
crazyhottommy / DNA Seq AnalysisDNA sequencing analysis notes from Ming Tang
bioinform / VarsimVarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
ding-lab / MuSiC2identifying mutational significance in cancer genomes
mskilab-org / JaBbAMIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
SigProfilerSuite / SigProfilerPlottingSigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
PCAWG-11 / HeterogeneityCode accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
waldronlab / CuratedTCGADataCurated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
mcmero / SVcloneA computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.
LincolnSteinLab / OncoGANA pipeline that accurately simulates high quality publicly cancer genomes (VCFs, CNAs and SVs).
friend1ws / EBCallan empirical Bayesian framework for mutation detection from cancer genome sequencing data
cancerit / CgpPindelCancer Genome Project Insertion/Deletion detection pipeline based around Pindel
Genomon-Project / Paplotpaplot creates various dynamic and interactive reports for cancer genome analysis.
maxwellsh / DIGDriverFlexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
czc / Nb DistributionnovoBreak: local assembly for breakpoint detection in cancer genomes
roland-rad-lab / MoCaSeqAnalysis pipelines for cancer genome sequencing in mice.
KChen-lab / TexomerTexomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
SigProfilerSuite / SigProfilerSimulatorSigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
jtaghiyar / KronosA workflow assembler for cancer genome analytics and informatics
