162 skills found · Page 1 of 6
flatironinstitute / CaImAnComputational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
MouseLand / Suite2pcell detection in calcium imaging recordings
flatironinstitute / CaImAn MATLABComplete Matlab pipeline for large scale calcium imaging data analysis
HelmchenLabSoftware / CascadeCalibrated inference of spiking from calcium ΔF/F data using deep networks
flatironinstitute / NoRMCorreMatlab routines for online non-rigid motion correction of calcium imaging data
xiuyechen / FishExplorerinteractive analysis of calcium imaging data from larval zebrafish
cabooster / DeepCADDeepCAD: Deep self-supervised learning for calcium imaging denoising
kavli-ntnu / MINI2P ToolboxThe codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More details can be found in the original paper "Large-scale two-photon calcium imaging in freely moving mice(2021)".
j-friedrich / OASISDeconvolution of calcium imaging data
bahanonu / CiatahCIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
schnitzer-lab / EXTRACT PublicEXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
flintlib / CalciumCalcium has been merged into FLINT -- use https://github.com/flintlib/flint/ instead
nel-lab / Mesmerize CoreHigh level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
soltanianzadeh / STNeuroNetSoftware for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Proceedings of the National Academy of Sciences (PNAS), 2019.
JinghaoLu / MIN1PIPEA MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
kushalkolar / MESmerizePlatform for Calcium Imaging analysis. DEPRECATED.
nocpiun / CalciumA web-based calculator app
bahanonu / Imaging ToolsA table containing imaging analysis tools for biology, with a focus on calcium imaging.
neuroethology / BentoMATA gui for browsing joint calcium imaging + behavioral data.
yu-lab-vt / AQuAAn event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
