31 skills found · Page 1 of 2
dtm2451 / DittoSeqColor blindness friendly visualization of single-cell and bulk RNA-sequencing data
ZJUFanLab / Bulk2spacea spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
mourisl / CentrifugerTaxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.
jlab-code / MethylStarA fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
aiminXie / ScPASA tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data
raphael-group / CalderCALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk DNA sequencing data
sfu-compbio / PhISCSTumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data
lingxuez / URSMA Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.
rnabioco / RaerCharacterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
eggduzao / OlympusA unified framework for discovering, analyzing, integrating, and visualizing regulatory motifs and transcription factor binding sites across bulk, single-cell, and long-read sequencing modalities.
stemangiola / PpcseqProbabilistic outlier identification for bulk RNA sequencing data
huanglikun / BRMBlock Regression Mapping (BRM) is a statistical method for QTL mapping based on bulked segregant analysis by deep sequencing
raphael-group / CNT MDSoftware for inferring the copy-number profiles of tumor clones and their evolution from fractional copy numbers obtained from multi-sample bulk sequencing data.
cran / BisqueRNA:exclamation: This is a read-only mirror of the CRAN R package repository. BisqueRNA — Decomposition of Bulk Expression with Single-Cell Sequencing. Homepage: https://www.biorxiv.org/content/10.1101/669911v1 Report bugs for this package: https://github.com/cozygene/bisque/issues
complextissue / Snakemake Bulk Rna Seq WorkflowSnakemake workflow for bulk RNA sequencing with pytximport.
MarekSvob / PolyAfilterProject exploring the effects of internal poly(dT) priming in bulk and single cell RNA sequencing.
USDA-FSEPRU / PorcinePBMCs BulkRNAseq ScRNAseqScripts used for analysis of bulk RNA-seq, NanoString, and single-cell RNA-seq data from porcine PBMCs in the manuscript "Reference transcriptomes of porcine peripheral immune cells created through bulk and single-cell RNA sequencing" by Herrera-Uribe & Wiarda et al, 2021 (Preprint), available at https://doi.org/10.1101/2021.04.02.438107.
raphael-group / FastBEultrafast phylogenetic reconstruction from bulk DNA sequencing data
haghshenas / PhISCSTumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data
czbiohub-sf / MERFISH Mouse ComparisonFigure notebooks for "Comparative analysis of MERFISH spatial transcriptomics with bulk and single-cell RNA sequencing"
