59 skills found · Page 1 of 2
maxplanck-ie / SnakepipesCustomizable workflows based on snakemake and python for the analysis of NGS data
nf-core / MethylseqMethylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
nloyfer / Wgbs Toolstools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
xie186 / ViewBSViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
smithlabcode / MethpipeA pipeline for analyzing DNA methylation data from bisulfite sequencing.
RWilton / AriocArioc: GPU-accelerated DNA short-read alignment
BSSeeker / BSseeker2A versatile aligning pipeline for bisulfite sequencing data
kdkorthauer / DmrseqR package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
dinhdiep / MONOD2MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data
jlab-code / MethylStarA fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
ENCODE-DCC / Wgbs PipelineENCODE whole-genome bisulfite sequencing (WGBS) pipeline
heathsc / GemBSgemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).
chhylp123 / BitMapperBSBitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing
MarWoes / Wg Blimpwg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data
jsh58 / DMRfinderIdentifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
NuttyLogic / BSBoltBiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool
ben-laufer / CpG MeA whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)
BIMSBbioinfo / PigxPipelines in genomics
paoyangchen-laboratory / MethgoMethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data
aryeelab / Bisulfite Seq ToolsSuite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis for various protocols including Whole Genom Bisulfite Sequencing (WGBS), Reduced Representation Bisulfite Sequencing (RRBS) and Hybrid Selection Bisulfite Sequencing (HSBS).
