11 skills found
biosimulations / BiosimulationsA platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
SemBioProcess / SemGenA tool for semantics-based annotation and composition of biosimulation models
JecaTosovic / WaterNetworkAnalysisSet of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis
HECBioSim / LongbowLongbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
biosimulators / BiosimulatorsRegistry of containerized biosimulation tools that support a standard command-line interface
Netabolics / DemoGenome-scale biosimulation and drug target deconvolution demo.
sys-bio / LibOmexMetalibOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.
biosimulators / Biosimulators Test SuiteTool for validating that biosimulation software tools implement the BioSimulators standards for simulators
biosimulators / Biosimulators UtilsUtilities for building standardized command-line interfaces for biosimulation software packages
biosimulators / Biosimulators Simulator TemplateTemplate for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
NRT2024 / SpiderSimSpiderSim - Atom-Level Theory Digital Twin Biosimulation Platform
