27 skills found
ome / BioformatsBio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
CellProfiler / Python BioformatsRead and write life sciences file formats
glencoesoftware / Bioformats2rawBio-Formats image file format to raw format converter
scifio / ScifioSCientific Image Format Input & Output: a flexible, extensible framework for image I/O. *EXPERIMENTAL* All API is subject to change, so depend at your own risk! See also @openmicroscopy/bioformats.
nf-core / McmicroAn end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
andreped / Vsi2tifSimple tool for converting WSIs from cellSens VSI to pyramidal TIFF
imaging-formats / BffileModern Bio-Formats wrapper with clean lazy Python API
ahnlabb / BioformatsLoader.jlA julia package to load images using bioformats
WolframResearch / BioFormatsLinkPackage for interacting with Bio-Formats library in the Wolfram Language
BiologyTools / BioGTKA cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
PolusAI / BfioInterface to the Bioformats Java library
pskeshu / MicroscoperA simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.
sebi06 / BioFormatsReadThis package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.
Romain-Laine / TCSPC Image SimulationThis code provides an easy way to simulate TCSPC image data which includes effect of the IRF, background after-pulsing and laser repetition rate. Images are saved as OME.tiff using Bioformat.
BIOP / Ijp Operetta ImporterPerkinElmer Operetta Importer using BioFormats!
qupath / Qupath Bioformats ExtensionExtension to add Bio-Formats image support - **QuPath v0.1.2 only**
sebi06 / PSF XYZ Bead FitAutomatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.
imaris / ImarisConvertBioformatsNo description available
imaging-formats / Napari BioformatsNo description available
SchmollerLab / Java Portable WindowsPortable Java 8 and JDK 8 for Windows. Used for Cell-ACDC software to run BioFormats in Python
