46 skills found · Page 1 of 2
nanoporetech / DoradoOxford Nanopore's Basecaller
nanoporetech / BonitoA PyTorch Basecaller for Oxford Nanopore Reads
rrwick / Basecalling ComparisonA comparison of different Oxford Nanopore basecallers
nanoporetech / MegalodonMegalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
nanoporetech / RemoraMethylation/modified base calling separated from basecalling.
gear-genomics / TracyBasecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
nanoporetech / RerioResearch release basecalling models and configurations
nanoporetech / TaiyakiTraining models for basecalling Oxford Nanopore reads
Kirk3gaard / 2025 Crowdsource GPU Basecalling StatsA repository for collecting GPU basecalling stats
CMU-SAFARI / RawHashRawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).
WGLab / DeepMod2DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
epi2me-labs / Wf BasecallingNo description available
jordisr / PoreoverNanopore basecalling and consensus decoding
replikation / PoreCovSARS-CoV-2 workflow for nanopore sequence data
JMencius / LongBowBasecalling configuration prediction through FASTQ files
nanoporetech / PyguppyclientPython client library for Guppy
sirselim / Guppy Parameter OptimiserA small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
Kirk3gaard / 2023 Basecalling BenchmarksNo description available
nickloman / Nanopore Basecalling ScriptsSome simple scripts to ease management and local basecalling of millions of FAST5 files
asadprodhan / GPU Accelerated Guppy BasecallingGPU-accelerated guppy basecalling and demultiplexing on Linux
