40 skills found · Page 1 of 2
Merck / BioPhiBioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
manifoldbio / Mber OpenmBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence conditioning in backprop design through AlphaFold-Multimer. Preprint: https://www.biorxiv.org/content/10.1101/2025.09.26.678877v1
AstraZeneca / DiffAbXLThe official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
IGlab-VUMC / MAGE Ab GenerationMonoclonal Antibody GEnerator (MAGE) - a fine-tuned LLM for generating paired heavy-light antibody variable sequences with predicted binding specificity to an input antigen prompt sequence
brineylab / AbstarVDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
yangnianzu0515 / MFDesignOfficial implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design
jlparkI / AntPackTools for annotation, processing and ML for antibody sequences
gv20-therapeutics / Antibody In PytorchMachine learning models for antibody sequences in PyTorch
amelvim / Antibody Diffusion PropertiesGuiding diffusion models for antibody sequence and structure co-design with developability properties.
zeysun / AntiBMPNNRepo of AntiBMPNN project for antibody sequence design.
xinyu-dev / Annotate VAntibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
dohlee / Antiberty PytorchAn unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
mit-ll / AlphaSeq Antibody DatasetDataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide
gf712 / AbPyToolsPython package for analysis of antibody heavy and light chains
IBM / ReprogBERTCode for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
mgreenig / IgCraftVersatile human antibody sequence design
Abalign / AbalignA visualization software for antibody multi sequence alignment
ENPICOM / ImmunumA high-performance antibody and TCR sequence numbering tool for Rust, Python, Polars and JS/TS.
alchemab / Parapred PytorchPyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
Lailabcode / DeepSPDeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences.
