10 skills found
nf-core / ScrnaseqSingle-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
COMBINE-lab / Alevin Fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
COMBINE-lab / SimpleafA rust framework to make using alevin-fry even simpler
csoneson / AlevinQCCreate QC and summary reports for Alevin output
COMBINE-lab / EDS:bulb: :floppy_disk: :minidisc: A simple, intuitive and Efficient single cell binary Data Storage format
COMBINE-lab / UsefulafUseful scripts and tools related to alevin-fry
mikelove / Alevin2biocImporting alevin scRNA-seq counts into R/Bioconductor
COMBINE-lab / Seine RsA (rust)🦀 library and suite of tools for manipulating and processing the output of salmon, alevin, and alevin-fry 🐟
COMBINE-lab / QCatchQuality Control downstream of alevin-fry / simpleaf
COMBINE-lab / Alevin Paper PipelineA simple pipeline using CGAT framework for benchmarking and analysis.
