201 skills found · Page 1 of 7
MarioniLab / MiloRR package implementation of Milo for testing for differential abundance in KNN graphs
jenniferlu717 / BrackenBracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
bluenote-1577 / Sylphultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
NLM-DIR / TPMCalculatorTPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files
FrederickHuangLin / ANCOMBCDifferential abundance (DA) and correlation analyses for microbial absolute abundance data
AstralOrdana / Immersive WeatheringAn abundance of new natural systems to make your world feel more alive than ever.
holochain / Holochain UiUI for composing Holochain experiences. First app is the Abundance of Presence chat & meeting coordination tool. Also includes Persona and Profile Management with Vault.
hyunhwan-bcm / SalmonTESalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
nf-core / DifferentialabundanceDifferential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
meringlab / FlashWeave.jlInference of microbial interaction networks from large-scale heterogeneous abundance data
emdann / MilopyPython implementation of Milo for differential abundance testing on KNN graph
AroneyS / BinchickenBin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
bradkav / PBHboundsData and code for plotting bounds on the abundance of primordial black holes (PBHs).
a-slide / NanoCountEM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
biocore / SongbirdVanilla regression methods for microbiome differential abundance analysis
jonassibbesen / RpvgMethod for inferring path posterior probabilities and abundances from pangenome graph read alignments
kamimrcht / REINDEERREINDEER REad Index for abuNDancE quERy
Morisset / PyNeb DevelPyNeb development repository
Russel88 / DAtestCompare different differential abundance and expression methods
annayqho / TheCannona data-driven method for determining stellar parameters and abundances from stellar spectra
