57 skills found · Page 1 of 2
10XGenomics / Cellranger10x Genomics Single Cell Analysis
nf-core / ScrnaseqSingle-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
10XGenomics / LoupeRConvert Seurat objects to 10x Genomics Loupe files.
gavinha / TitanCNAAnalysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
johandahlberg / Awesome 10x GenomicsList of tools and resources related to the 10x Genomics GEMCode/Chromium system
nf-core / SpatialviPipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
10XGenomics / Supernova10x Genomics Linked-Read Diploid De Novo Assembler
epigen / Scrnaseq Processing SeuratA Snakemake workflow and MrBiomics module for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
nf-core / ScnanoseqSingle-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
aquaskyline / LRSIM10x Genomics Reads Simulator
walaj / BxtoolsTools for analyzing 10X Genomics data
10XGenomics / Longranger10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
lfranzen / Spatial Lung FibrosisRepository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcriptomics data presented in our associated manuscript.
10XGenomics / Analysis Guides10x Genomics analysis guides files
nf-core / SpatialxeNo description available
ucdavis-bioinformatics / Proc10xGprocessing 10x genomics reads
BaderLab / SingleLiverCellsScripts for processing single liver cells RNA-Seq 10X Genomics Data
cdarby / SamovarSomatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters
maxplanck-ie / 10X SnakepipeA snakemake pipeline for 10X genomics cellranger
wtsi-hpag / Scaff10XPipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
