135 skills found · Page 5 of 5
IMCS-Bioinformatics / DLNetworkForProteinAbundancePredictionDL based software for protein abundance prediction from RNA expression and gene annotation data
CSUBioGroup / DeepGOAA deep learning framework for gene ontology annotation with sequence- and network-based information
jorainer / EnsDb.Hsapiens.v75EnsDb database containing Ensembl based human gene/transcript annotations for Ensembl version 75. This repository represents the developmental version of the official package from Bioconductor http://www.bioconductor.org/packages/EnsDb.Hsapiens.v75
challagandla / Oracle Scrna SeqSingle-cell RNA-seq following scverse practices: QC, doublet detection, normalization, batch correction, clustering, marker genes, and cell-type annotation, with optional trajectory analysis.
ntamas / GfamAutomatic annotation of gene families
nadavbra / GeneffectA Python library for retrieving functional annotations of genes and analyzing the effects of genetic variants, currently focusing on proteomic data of protein-coding genes.
PeanutBase / BIND AnnotationScripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)
higlass / Gene AnnotationsNo description available
sigven / GeneOncoXHuman gene annotations for the oncology domain
metagentools / ConDiGA🗂️🧬 Contigs directed gene annotation for accurate protein sequence database construction in metaproteomics
sagnikbanerjee15 / Fungal Genome Assemblies And AnnotationAnalysis workflow to generate fungal assemblies, generate gene structural and functional annotations
chillitom / ReSharper.ExternalAnnotations.GeneratorFluent Library for generating ReSharper External annotation files.
NAL-i5K / AgBioData GFF3 RecommendationThe AgBioData GFF3 working group has developed recommendations to solve common problems in the GFF3 format. We suggest improvements for each of the GFF3 fields, as well as the special cases of modeling functional annotations, and standard protein-coding genes. We welcome discussion of these recommendations from the larger community.
IAndreu / Gene Annotation PipelineGene family annotation pipeline
hyphaltip / Fungi Gene Prediction ParamsProvide trained gene prediction parameters for Fungal genome annotation
TaoDFang / GerrGene-set module annotation or gene-set enrichment within a regression based framework
gizemabali / Bioinformatics Common Functions ProcessesFind/list Gene Ontology (GO) annotations (molecular function, biological process and cellular component) and pathways for given proteins
bjpop / AnnokeyAnnotation of gene lists with keyword hits from the NCBI gene database
ArnaudDroitLab / LD AnnotPractical program to annotate candidate polymorphism using annotations for genes in genetic linkage in the specific experiment.
LDolanLDolan / Har Annotation Tissue ContextA mini bioinformatics project exploring Human Accelerated Regions (HARs) — moving from genomic coordinates to biological meaning through nearest gene annotation, regulatory context, tissue expression, and pathway enrichment. Includes a prototype context-aware annotation engine.
