228 skills found · Page 4 of 8
mahmoodlab / Multimodal Cancer Origin PredictionDeep learning-based multimodal integration of histology and genomics to improves cancer origin prediction
cbg-ethz / SCICoNESingle-cell copy number calling and event history reconstruction.
mskcc / MimsiMicrosatellite Instability Classification using Multiple Instance Learning
gerstung-lab / BaSISSCode for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper
NCIP / National Biomedical Image ArchiveThe National Biomedical Imaging Archive (NBIA) is a free and open source service and software application that enables users to securely store, search, and download diagnostic medical images, providing a searchable national repository integrating in vivo cancer images with clinical and genomic data. Using role-based security, NBIA provides web-based access to de-identified DICOM images, image markup, annotations, and rich meta data.
biolxy / Handbook Cancer Genomicsmy first book, Biological information analysis of cancer tumors
cBioPortal / CgdsrR-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
umccr / Umccrise:snake: DRAGEN Tumor/Normal workflow post-processing
SigProfilerSuite / SigProfilerTopographySigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.
tobiasrausch / LoraxA long-read analysis toolbox for cancer and population genomics
zuozhaorui / SWnetCore code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structures"
PoisonAlien / Somaticfreqknowledge-based genotyping of cancer hotspots from the tumor BAM files
CMUSchwartzLab / Cancer Phylogenetics Prognostic PredictionImproving Personalized Prediction of Cancer Prognoses with Clonal Evolution Models
anitalu724 / MutScapeＡ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization for studying cancer genomics.
SigProfilerSuite / SigProfilerSimulatorSigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
sigven / CacaoCallable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
cuicathy / MMD SurvivalPredictionCode and data for MICCAI 2022 accepted paper: Survival Prediction of Brain Cancer with Incomplete Radiology, Pathology, Genomics, and Demographic Data
SigProfilerSuite / SigProfilerMatrixGeneratorRR wrapper for utilizing the SigProfilerMatrixGenerator framework
rezacsedu / Neural Ensemble Method For Cancer PredictionA Snapshot Neural Ensemble Method for Cancer Type Prediction Based on Copy Number Variations
nf-core / TumourevoAnalysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)
