10,230 skills found ¡ Page 316 of 341
jaechang-hits / literature-reviewConducting systematic, scoping, and narrative literature reviews. Covers PRISMA/PRISMA-ScR protocols, search strategy (Boolean, MeSH), database selection (PubMed, Scopus, Web of Science, Embase), screening, data extraction, evidence synthesis (narrative, meta-analysis, thematic), and reporting
jaechang-hits / scientific-critical-thinkingEvaluating scientific evidence and claims. Covers study design hierarchy (RCT to expert opinion), effect sizes (OR, RR, NNT, Cohen's d), confounding, p-value vs clinical significance, GRADE quality assessment, reproducibility, and bias types (selection, information, confounding, reporting)
jaechang-hits / scientific-slidesScientific presentations for conferences, seminars, thesis defenses, and grant pitches. Slide design, talk structure, timing, data viz for slides, QA. PowerPoint and LaTeX Beamer. For posters use latex-research-posters.
jaechang-hits / kegg-pathway-analysisGuide to KEGG pathway enrichment for DEG results. Covers ORA vs GSEA, mandatory directionality splitting, KEGG organism codes, API failure handling with offline fallbacks, cross-condition comparisons, and answer-first reporting. Consult when running enrichment with clusterProfiler or gseapy.
jaechang-hits / multiqc-qc-reportsAggregates QC from 150+ bioinformatics tools into one interactive HTML report. Scans FastQC, samtools, STAR, HISAT2, Trim Galore, featureCounts, Kallisto, Salmon, Picard, GATK logs; merges per-sample stats with plots. For NGS pipeline-wide QC.
jaechang-hits / cell-type-annotationscRNA-seq cell type annotation - read before any annotation skills. Chooses and runs the route: name clusters manually from canonical markers (scanpy, runnable code here), transfer labels with CellTypist or a popV/scANVI on a reference, or do both and validate one against other.
jaechang-hits / statistical-analysisGuided statistical analysis: test choice, assumption checks, effect sizes, power, APA reporting. Pick tests, verify assumptions, or format results for publication. Covers frequentist (t-test, ANOVA, chi-square, regression, correlation, survival, count, reliability) and Bayesian.
jaechang-hits / scientific-visualizationGuide for choosing and creating scientific visualizations for publications and talks. Covers chart-type selection by data structure, color theory for accessibility/print, figure composition, journal formatting (Nature, Cell, ACS), and common pitfalls.
jaechang-hits / exploratory-data-analysisMethodology for exploratory data analysis on scientific files. Decision frameworks by data type (tabular, sequence, image, spectral, structural, omics), quality assessment, report generation, format detection across 200+ formats
jaechang-hits / citation-managementSelecting a reference manager and applying citation styles. Compares Zotero, Mendeley, EndNote, Paperpile; covers APA/Vancouver/ACS/Nature styles, DOI management, citation tracking, and Word/Google Docs/LaTeX integration
jaechang-hits / clinical-decision-support-documentsGuidelines for clinical decision support (CDS) documents: biomarker-stratified cohort analyses and GRADE-graded treatment reports. Covers structure, executive summaries, evidence grading (1Aâ2C), stats (HR, CI, survival), and biomarker integration.
jaechang-hits / scientific-brainstormingStructured ideation methods: SCAMPER, Six Thinking Hats, Morphological Analysis, TRIZ, Biomimicry, plus more. Decision framework for picking methods by challenge type (stuck, improving, systematic exploration, contradiction)
jaechang-hits / scientific-manuscript-writingScientific manuscript writing: IMRAD, citation styles (APA/AMA/Vancouver/IEEE), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA/ARRIVE), writing principles (clarity/conciseness/accuracy), venue-specific style. For LaTeX see companion assets.
jaechang-hits / scientific-schematicsDesigning scientific schematics, diagrams, and graphical abstracts. Covers tool selection (BioRender, Inkscape, Affinity, PowerPoint), design principles for pathway diagrams, mechanism schematics, experimental workflows, and journal graphical abstracts.
jaechang-hits / sar-analysisStructure-activity relationship (SAR) analysis guide for drug discovery including molecular descriptor analysis, scaffold analysis, and activity cliff detection.
jaechang-hits / depmap-crispr-essentialityDepMap CRISPR gene effect (Chronos) analysis: sign convention for essentiality, per-gene NaN-safe Spearman correlation, data loading/alignment. For general NaN-safe correlation see nan-safe-correlation; for quality filtering see degenerate-input-filtering.
jaechang-hits / general-figure-guideUniversal QA checklist for generated scientific plots: overlapping labels, clipped text, missing axes/legends, overcrowded data, and cross-journal resolution/format guidance.
jaechang-hits / hypothesis-generationStructured hypothesis formulation: turn observations into testable hypotheses with predictions, propose mechanisms, design experiments. Follows the scientific method. Use scientific-brainstorming for open ideation; hypogenic for automated LLM hypothesis testing on datasets.
jaechang-hits / peer-review-methodologyStructured peer review of manuscripts and grants. 7-stage evaluation: initial assessment, section review, statistical rigor, reproducibility, figure integrity, ethics, writing. Covers CONSORT/STROBE/PRISMA and report structure.
giuseppe-trisciuoglio / drawio-logical-diagramsCreates professional logical flow diagrams and logical system architecture diagrams using draw.io XML format (.drawio files)
giuseppe-trisciuoglio / clean-architectureProvides implementation patterns for Clean Architecture, Hexagonal Architecture (Ports & Adapters), and Domain-Driven Design in Java 21+ Spring Boot 3.5+ applications
giuseppe-trisciuoglio / langchain4j-rag-implementation-patternsProvides Retrieval-Augmented Generation (RAG) implementation patterns with LangChain4j for Java. Generates document ingestion pipelines, embedding stores, vector search, and semantic search capabilities
giuseppe-trisciuoglio / spring-boot-project-creatorCreates and scaffolds a new Spring Boot project (3.x or 4.x) by downloading from Spring Initializr, generating package structure (DDD or Layered architecture), configuring JPA, SpringDoc OpenAPI, and Docker Compose services (PostgreSQL, Redis, MongoDB)
giuseppe-trisciuoglio / spring-boot-security-jwtProvides JWT authentication and authorization patterns for Spring Boot 3.5.x covering token generation with JJWT, Bearer/cookie authentication, database/OAuth2 integration, and RBAC/permission-based access control using Spring Security 6.x
giuseppe-trisciuoglio / sonarqube-mcpProvides SonarQube and SonarCloud integration patterns via the Model Context Protocol (MCP) server. Enables quality gate monitoring, issue discovery and triaging, pre-push code analysis, and rule education directly in the agent workflow
giuseppe-trisciuoglio / nextjs-performanceExpert Next.js performance optimization skill covering Core Web Vitals, image/font optimization, caching strategies, streaming, bundle optimization, and Server Components best practices
giuseppe-trisciuoglio / aws-cloudformation-bedrockProvides AWS CloudFormation patterns for Amazon Bedrock resources including agents, knowledge bases, data sources, guardrails, prompts, flows, and inference profiles
giuseppe-trisciuoglio / aws-cloudformation-cloudfrontProvides AWS CloudFormation patterns for CloudFront distributions, origins (ALB, S3, Lambda@Edge, VPC Origins), CacheBehaviors, Functions, SecurityHeaders, parameters, Outputs and cross-stack references
giuseppe-trisciuoglio / aws-cloudformation-ecsProvides AWS CloudFormation patterns for ECS clusters, task definitions, services, container definitions, auto scaling, blue/green deployments, CodeDeploy integration, ALB integration, service discovery, monitoring, logging, template structure, parameters, outputs, and cross-stack references
giuseppe-trisciuoglio / aws-cloudformation-lambdaProvides AWS CloudFormation patterns for Lambda functions, layers, API Gateway integration, event sources, cold start optimization, monitoring, logging, template validation, and deployment workflows
